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Dr. Williamson will discuss her research on birds that make extreme seasonal shifts in elevation during migration and how these movements affect ecology, evolution, and physiology. She will highlight her lab’s work on giant hummingbirds (Patagona spp.) in the Andes, where her team has combined movement tracking, genomics, and field physiological experiments to uncover extreme daily movements, a spectacular long-distance migratory journey involving an extreme elevational ascent, and cryptic speciation between the world’s largest hummingbirds.
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Experimental evolution in vivo is a powerful approach to identify the selective pressures shaping bacterial adaptation during infection, yet how host immunity modulates these evolutionary trajectories remains a fundamental gap in infection biology. Applying whole-population genomic sequencing to replicate bacterial populations serially passaged through murine or porcine infection models, we demonstrate that niche-specific selective pressures produce convergent genetic adaptations, including parallel mutations modulating pneumococcal surface charge during colonization and prophage-mediated disruption of global regulators during chronic Pseudomonas aeruginosa wound infection. Host immune status critically shapes these trajectories, as neutropenic hosts broaden mutational pathways to fluoroquinolone resistance in Acinetobacter baumannii while functional immunity constrains the outgrowth of resistant variants. Most recently, we show that Streptococcus pneumoniae subjected to combined antibiotic and immune pressure evolves convergent mutations altering the RNA degradosome that confer broad-spectrum antibiotic tolerance through a bet-hedging transcriptional strategy influenced by host immune state. Together, these studies establish that in vivo experimental evolution provides a mechanistic roadmap for predicting genetic pathways to treatment failure and informing strategies to constrain the evolution of antimicrobial resistance.
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I will present work spanning three areas. First, a simulation-based framework establishing best practices for local ancestry inference across reference panel compositions, admixture demographics, and genotype discovery approaches. Second, our recently published method Tractor-Mix, a local ancestry-informed mixed model that extends our earlier Tractor framework to enable well-calibrated GWAS in admixed cohorts with relatedness. We demonstrate Tractor-Mix’s performance across multiple large datasets including the UK Biobank, Yale-Penn cohort, and Mexico City Prospective Study, finding novel loci missed by traditional methods and better determining the ancestry driving unique signals. Third, I will describe our application of local ancestry inference across more than 140,000 genomes in gnomAD, which substantially refines ancestry-specific allele frequency estimates with direct implications for clinical variant interpretation. Together, this work illustrates how ancestry-aware statistical methods can improve genetic discovery, risk prediction, and variant interpretation across the full range of human genetic diversity.
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